NCI Thesaurus Content Characterization

Frank Olken (LBNL)
2005-03-14

II. Core Content Characterization

Attributes marked with an asterisk (*) are considered mandatory.

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Core Content Characterization
Attribute Value
Title* National Cancer Institute Thesaurus
Acronym NCI Thesaurus
**One of the following (Web page(s), Identifier, or Contact Information) is mandatory:
Web page(s)** http://nciterms.nci.nih.gov/
Identifier** http://nciterms.nci.nih.gov/
Contact Information**

Frank Hartel, NCI Center for Bioinformatics, 6116 Executive Blvd, Suite 403, Bethesda, MD 20892, Tel: 301 435-3869, Email: hartel@exchange.nih.gov; Sherri de Coronado 113 Brookline St, Moraga, CA 94556, Tel: 925 377-5959, Email: decorons@mail.nih.gov

Inclusion Rationale*

Structured, available in Ontylog XML and OWL formats, contains cancer-related and general biology and medicine content.

Subject* Biological, biomedical, health care
Kind of Metadata* definitions, natural language and logic based, code sets, thesauri, partonomies, ontologies, matchings, mappings - across terminologies, schemas, ? (In NCI Metathesaurus, a separate product, not in NCI Thesaurus - See http://ncimeta.nci.nih.gov)
Size statistics (estimated)* 115,000 terms, 38,000 concepts
Initial Submitter* Sherri De Coronado
Date of Initial Survey* ??

III. Supplementary Content Characterization

Attributes marked with an asterisk (*) are considered mandatory.

Supplementary Content Characterization
Attribute Value
Date* Dec 30, 2004
Creator National Cancer Institute, Enterprise Vocabulary Service
Publisher* National Cancer Institute, Enterprise Vocabulary Service
Description*

Taxonomic (heirarchical) browser, advanced search

Language(s)* English
Graph-theoretic Classification* directed graph
Format / Schemas(s)* Available as flat files, OWL, and XML (Apelon's Ontylog XML files)
Media / Download* ftp://ftp1.nci.nih.gov/pub/cacore/EVS/
Constraint Specifications Referential integrity constraints
Protocol(s) FTP
Licensing Issues* None
Export restrictions None
Subsets Web based search capability, not clear if this can be used for bulk XML retrieval. Web service APIs ???
Versions, Updates 2005-02-15, Version 04.12g
Documentation ftp://ftp1.nci.nih.gov/pub/cacore/
Character Set Encoding* ASCII or UTF-8 (?)
Measurement units Not applicable.
Dataset / Standards Dependencies None
Related Datasets NCI Metathesaurus
Software tools Web based search tools, caCORE (Java) SDK toolkit
Audience(s) For use by NCI staff, NCI funded cancer centers, NCI supported cancer researchers.
Citation ???
Surveyor* Sherri De Coronado
Date of Survey* 2005-03-14

IV. Content Characterization by XMDR Staff

The following data elements are to be supplied by XMDR project staff/collaborators.

Attributes marked with an asterisk (*) are considered mandatory.

Content Characterization by XMDR Staff
Attribute Value
MDR Participant Expertise Sherri De Coronado
MDR Evaluator* Sherri De Coronado
Inclusion Priority* 1

Maintained by Frank Olken (LBNL) at Lawrence Berkeley National Laboratory. olken@lbl.gov Last updated: 2004-03-14, Monday, 9:35 PM PST

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